PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007603
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 317aa    MW: 34635.3 Da    PI: 5.1072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-261133729PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.4e-14118156346
        AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                y+GVr +k +g+W+AeIr  +     + kr +lg+f+t  +Aa aa
  Sof007603 118 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDT-AGAASAA 156
                9*****99.**********55.....45**********.7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.924117175IPR001471AP2/ERF domain
PfamPF008472.9E-8117156IPR001471AP2/ERF domain
SMARTSM003809.5E-12117181IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-14117166IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-18117168IPR001471AP2/ERF domain
PRINTSPR003677.3E-8118129IPR001471AP2/ERF domain
CDDcd000184.15E-15118149No hitNo description
PRINTSPR003677.3E-8140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAPLNHQQVL IKKVLAKKTN TKRMSGFGLK PSAALLKSRP QQQPPAPVQP RRRVRVLFED  60
PDATDSDSDD EEAGAPTGPA AKTKRFSFEA FIGKAPAKPV LQAATVAACT SGGAPESYRG  120
VRLRKWGKWA AEIRNPFTGK RQWLGTFDTA GAASAAYLSA SRSFADEKRR RRGQPVXGYL  180
TSYFGKRHTD GVLFVVHLDC SFAHPSPSSV LESTKAAPNP QSPEPVATPT PPVLLPLPST  240
ESAQLPDDPE FYQDLLRGLQ LPDIDPMDFR AGLDALDVXD AGFCLDDEQD LLLGELRDEE  300
LEIDLDLDLD DINDVFX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968058.11e-147ethylene-responsive transcription factor ERF118
TrEMBLK3XJW31e-145K3XJW3_SETIT; Uncharacterized protein
STRINGSi002186m1e-146(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.22e-13related to AP2 2