PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007609
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 317aa    MW: 35944.5 Da    PI: 10.2872
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-583133727PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-1468114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r+ W+++Ed++l++ v  + ++ W+ Iar ++ gR+++qc++rw  yl
        Sof007609  68 RNTWSQDEDDILIQMVGPHCKNKWSDIARSIP-GRSREQCRERWMFYL 114
                      789*****************************.***********9875 PP
2Myb_DNA-binding42.91.2e-13121165248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++W+ +Ed  l++a++ lG++ W +  ++++ gRt+k +k+rw++++
        Sof007609 121 QPWSRQEDITLIRAHRILGNK-WCKLTKHFP-GRTGKAIKNRWHTLM 165
                      79*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.84363118IPR017930Myb domain
SuperFamilySSF466892.64E-2666161IPR009057Homeodomain-like
SMARTSM007172.6E-1267116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1770117IPR009057Homeodomain-like
CDDcd001675.02E-1170114No hitNo description
PfamPF139212.2E-1571131No hitNo description
Gene3DG3DSA:1.10.10.602.2E-19118167IPR009057Homeodomain-like
SMARTSM007174.9E-12119167IPR001005SANT/Myb domain
PROSITE profilePS5129415.766119169IPR017930Myb domain
CDDcd001675.89E-10122165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRRSGDGVTT RRSSGTGSGR SSSCSRKIDW IADEHGGLQR PSKRFKAEER KRTAEFLSHK  60
TGNSVKRRNT WSQDEDDILI QMVGPHCKNK WSDIARSIPG RSREQCRERW MFYLDPAVNN  120
QPWSRQEDIT LIRAHRILGN KWCKLTKHFP GRTGKAIKNR WHTLMNGKRN SDYVRGLTID  180
NKCSGTIKSG QDSSCINIQV AVDCPVKPKP EQGFTEDGRN AALKKKGSDS IYSERYVSVN  240
VSEWQIARSS LPVVTKEKEV LPSSSVVQKV SCVAAKFETS LQKKESTNYL EAPLNGVNAR  300
FYPAHDHVSI HDHFDDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-227116830127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952183.11e-103transcription factor MYB3R-4
TrEMBLA0A0C6WCK80.0A0A0C6WCK8_9POAL; ScMYB29 protein
STRINGSb04g010280.11e-131(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.16e-34myb domain protein 3r-4