PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007625
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 316aa    MW: 35109 Da    PI: 8.3081
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-180133727PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.2e-116084327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               +++C+++++tGtC +G++CkF+H++
  Sof007625 60 QPECQYYLKTGTCEFGPTCKFHHPR 84
               799********************96 PP
2zf-CCCH32.91.1e-10106130327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C ++++tG+Cky ++CkF+H++
  Sof007625 106 EKECGYYLKTGQCKYANTCKFHHPE 130
                679********************96 PP
3zf-CCCH27.65e-09257282227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG  k+G+ CkF+H++
  Sof007625 257 DEPECQYYMKTGDGKFGAVCKFHHPR 282
                789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1695785IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-55784IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-86084IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-66186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-56385IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206103131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5104130IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4109129IPR000571Zinc finger, CCCH-type
SMARTSM003560.29255282IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.854255283IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-6257282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MPICNLCHIL SEQVNLTALT TSRLDCDDXG MSCRFNHTPD RNLAIASARM KGEYPERVGQ  60
PECQYYLKTG TCEFGPTCKF HHPREKAGIA GRVQLNTLGY PLRPSEKECG YYLKTGQCKY  120
ANTCKFHHPE LFNVVPSSRG SPIYTSVHSS ASAGPQSYTG TMPSWAFPRA SFIPSPRWQS  180
PSNYAPMIVP QGLVQVPSWN SYPGQLQSPG AQQTYGSSQQ GESSAGNQGM LSPYRSSSLP  240
VPQYALQREN VFPERPDEPE CQYYMKTGDG KFGAVCKFHH PRVRALPPPD CVLSPMGLPI  300
RSSEELCXFY SRYGIX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.24920.0callus| crown| inflorescence| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312643.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1B6Q7U10.0A0A1B6Q7U1_SORBI; Uncharacterized protein
STRINGSb03g043810.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-110zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]