PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007831
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family CPP
Protein Properties Length: 308aa    MW: 34451.6 Da    PI: 8.1407
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-24363PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.43.4e-14137440
        TCR  4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
               k+C+Ckks+C+k+YC Cfa+g+ C+e+C Ce C+Nk+
  Sof007831  1 KTCSCKKSRCMKLYCVCFASGSRCTESCGCEPCENKQ 37
               68*********************************96 PP
2TCR48.22.2e-1577112439
        TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dC+N 
  Sof007831  77 RKCTCKKSGCLKKYCDCYQGGAGCSIHCKCDDCRNP 112
                79********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036381.4E-10136IPR005172CRC domain
PROSITE profilePS5163426.6941114IPR005172CRC domain
SMARTSM011148.9E-6139IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011144.9E-1474115IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.8E-1177111IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
KTCSCKKSRC MKLYCVCFAS GSRCTESCGC EPCENKQPLQ VAPRIAPVLP LKPVQTSEAG  60
QHIVEQVIRS PMDLIRRKCT CKKSGCLKKY CDCYQGGAGC SIHCKCDDCR NPFGRKVGVI  120
LDGKSSVAAP ILHERNGTEV DSSDDEDDFY MNRQLSPIPP SPVSRESSFQ QETLVGVEVQ  180
TMNGHLYPKP LAQVRPEPSP WQPSRRPVEE PRGEIWRFSR RPSEDGTSDA MEAHAIAPRE  240
SKKPEIHGDN RFSIPRCIEV MSAMAELSPV EKSLAPDVFL DANNREIFLS LSVDIRPIWL  300
RRKMKSLV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.127670.0bud| inflorescence| leaf| meristem| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443514.10.0uncharacterized protein LOC8076665
TrEMBLC5YRG90.0C5YRG9_SORBI; Uncharacterized protein
STRINGSb08g020790.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-31TESMIN/TSO1-like CXC 2