PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007833

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C3H

Protein Properties

Length: 308aa MW: 33476.5 Da PI: 8.9086

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-2989	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34	5.1e-11	58	81	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ Sof007833 58 EPDCSYYMRTGMCRFGMTCKFNHP 81 789********************8 PP
2	zf-CCCH	39.4	9.7e-13	103	127	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Sof007833 103 QPECQYYLKTGTCKFGATCKFHHPR 127 799********************96 PP
3	zf-CCCH	37.2	4.8e-12	149	173	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Sof007833 149 EKECAYYLRTGQCKFGSTCKFHHPQ 173 679********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8E-4	55	82	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.253	55	83	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-7	58	81	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.81E-6	60	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	61	82	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.0E-6	100	127	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.244	100	128	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.09E-6	103	129	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.0E-10	103	127	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-5	106	128	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.4E-5	146	173	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.8E-7	146	175	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.619	146	174	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.3E-10	149	173	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	152	172	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MAAPSGGGGG GAGEGSSSAA AAATIGAHGV DQEAMWQMNL GETMAPMELG PYPERVGEPD 60 CSYYMRTGMC RFGMTCKFNH PADRKLAVAA ARMKGEYPQR IGQPECQYYL KTGTCKFGAT 120 CKFHHPREKA AMATRVQLNE LGYPLRPNEK ECAYYLRTGQ CKFGSTCKFH HPQPSTMMVA 180 VRGSVYSPGQ SATSPGQHAY QGAVTSWPLS RSASFIASPR WPGHSSYAQV MVPPXACQVP 240 GWSPYTAQMG SSSSDEQQRT TGAAQYYTGS RQSGTAGISD QGMFHPTQQV LFPLDFMPYR 300 REMYSRKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.3082	0.0	callus\| inflorescence\| meristem\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450713.1	0.0	zinc finger CCCH domain-containing protein 63
Swissprot	Q2R4J4	1e-169	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A1Z5RII6	1e-180	A0A1Z5RII6_SORBI; Uncharacterized protein
STRING	Sb05g013190.1	1e-180	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	8e-95	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]