PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007954
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GATA
Protein Properties Length: 304aa    MW: 31714.1 Da    PI: 6.9756
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-329133727PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.54.4e-14262297136
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                C++C   kTp+WR gp g+ktLCnaC ++ ++ +l+
  Sof007954 262 CTHCAXEKTPQWRTGPLGPKTLCNACCVRXKSGRLM 297
                *******************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-6256304IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-9259293No hitNo description
PROSITE profilePS501149.605260292IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-9260300IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-11262297IPR000679Zinc finger, GATA-type
PROSITE patternPS003440262287IPR000679Zinc finger, GATA-type
CDDcd002023.69E-9262304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MASEWEMAAM GVELGMGMGT YHHNHASSIT TAPMSSQHIR CAIYCTAHHH HDYWMPPMGD  60
AMRVDDLLDL STGAGAHEFF PTAAAATDKG HQHHSGAMGE PSPTANSSDH QTSLLSFADE  120
FYIPSEEAAE LEWLSKFVDD SYSDMPNYSS AAHHAAMAAA AAANAAGNGG GTSAGQDGSC  180
VTAAPGRGAR SKRSGRATAA AWHSLVPRPP SQSSPSTSCS SSDFLSSSNK PARPNGGIRG  240
KKSPGGAAAG EVGMDEGGVR XCTHCAXEKT PQWRTGPLGP KTLCNACCVR XKSGRLMPXN  300
RPQS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.71610.0callus| crown| inflorescence| leaf| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983678.11e-130GATA transcription factor 2
TrEMBLA0A059PZL41e-138A0A059PZL4_9POAL; GATA transcription factor
STRINGSi036273m1e-129(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-21GATA transcription factor 2