PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007974
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 304aa    MW: 32660.9 Da    PI: 8.7957
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S37211121PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-1768115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde+lv +++ +G g+W+  ++  g+ R++k+c++rw +yl
        Sof007974  68 KGAWTKEEDERLVAYIRAHGEGCWRPLPKAAGLLRCGKSCRLRWMNYL 115
                      79******************************99************97 PP
2Myb_DNA-binding55.31.5e-17121165147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T +Edel+++++ +lG++ W++Ia  ++ gRt++++k++w+++
        Sof007974 121 RGNFTDDEDELIIRLHSLLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 165
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-2359118IPR009057Homeodomain-like
PROSITE profilePS5129416.05763115IPR017930Myb domain
SuperFamilySSF466897.35E-2967162IPR009057Homeodomain-like
SMARTSM007174.7E-1367117IPR001005SANT/Myb domain
PfamPF002491.1E-1468115IPR001005SANT/Myb domain
CDDcd001671.36E-1070115No hitNo description
PROSITE profilePS5129428.1116170IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-27119170IPR009057Homeodomain-like
SMARTSM007171.4E-16120168IPR001005SANT/Myb domain
PfamPF002491.3E-15121165IPR001005SANT/Myb domain
CDDcd001672.47E-12123166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
XVSHFYLVNT KLDCRPDLIP CERLRGDYSC GVXKDHESSQ ASIGGAVAAR STSIMGRSPC  60
CEKAHTNKGA WTKEEDERLV AYIRAHGEGC WRPLPKAAGL LRCGKSCRLR WMNYLRPDLK  120
RGNFTDDEDE LIIRLHSLLG NKWSLIAGQL PGRTDNEIKN YWNTHIKRKL LARGIDPQTH  180
RALGADAATA PGVAAHHRAT AAALLHHAGA AVVVVPAPVK LAAVKPAPAE SSSDDGGSSS  240
GSSSGGGAGE PRCPDLNLDL SVGPPAVVAD TPTLHLAVCL GYRLCLRPGR FAVTMLKLYC  300
VSIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28681707108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.222470.0inflorescence| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344512.11e-113uncharacterized protein LOC100384757 isoform 1
SwissprotP813931e-90MYB08_ANTMA; Myb-related protein 308
TrEMBLA3FF090.0A3FF09_SACOF; MYB protein
STRINGGRMZM2G077789_P011e-113(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-84myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]