PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007976
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 303aa    MW: 33851.6 Da    PI: 6.4383
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-111328PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.47e-115330274373
       GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                ss+ l+++++++e++P++kf+++ aN aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp +RiTg++++ s   +   le +g+rL+++A  
  Sof007976   3 SSDLLSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHIAQGTQWISLLQALAARPGGPPFVRITGIDDSVSAyaRGGGLELVGRRLSHIAGL 102
                57889999********************************************************************888899999*************** PP

       GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                 +vpf+f++ va + +++e e+L + pgEa+aVn+ l+lh+++de+vs++++rd++L+lvk+lsPkv+++veqe+++n+++F++rf+e+l+yy+a+f+s+
  Sof007976 103 YKVPFQFDA-VAISSSEVEEEHLGIVPGEAVAVNFTLELHHIPDETVSTANHRDRILRLVKGLSPKVLTLVEQESNTNTAPFAQRFAETLDYYTAIFESI 201
                *********.688999************************************************************************************ PP

       GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                +  lpr+++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++aGFkp pls  +++++k+ll+ +++d y++ +++g l+lgWk+r+L+  S
  Sof007976 202 DLALPRDDRERINIEQHCLAREIVNLVACEGDERVERHEVFGKWKARLMMAGFKPSPLSALVNATIKTLLQSYSQD-YKLAQRDGVLYLGWKNRALIISS 300
                **************************************************************************77.*********************** PP

       GRAS 372 aW 373
                aW
  Sof007976 301 AW 302
                ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.2971284IPR005202Transcription factor GRAS
PfamPF035142.4E-1123302IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
PRSSDLLSYM HFLYEACPYF KFGYMSANGA IAEAVKGEDR IHIIDFHIAQ GTQWISLLQA  60
LAARPGGPPF VRITGIDDSV SAYARGGGLE LVGRRLSHIA GLYKVPFQFD AVAISSSEVE  120
EEHLGIVPGE AVAVNFTLEL HHIPDETVST ANHRDRILRL VKGLSPKVLT LVEQESNTNT  180
APFAQRFAET LDYYTAIFES IDLALPRDDR ERINIEQHCL AREIVNLVAC EGDERVERHE  240
VFGKWKARLM MAGFKPSPLS ALVNATIKTL LQSYSQDYKL AQRDGVLYLG WKNRALIISS  300
AWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-61330373375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.94640.0bud| callus| inflorescence| leaf| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460928.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLC5XCH40.0C5XCH4_SORBI; Uncharacterized protein
STRINGSb02g037650.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-148GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]