PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008015
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 302aa    MW: 33920 Da    PI: 5.9443
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-16112PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.1e-092482812255
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  Sof008015 248 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 281
                69*****************************885 PP
2ELK35.42.3e-12201222122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK++Ll+KYsgyL+sL+ E+s
  Sof008015 201 ELKNRLLNKYSGYLSSLWRELS 222
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.8E-2062106IPR005540KNOX1
PfamPF037909.9E-2164104IPR005540KNOX1
SMARTSM012562.3E-28111162IPR005541KNOX2
PfamPF037913.3E-22117160IPR005541KNOX2
PfamPF037891.3E-9201222IPR005539ELK domain
SMARTSM011889.5E-7201222IPR005539ELK domain
PROSITE profilePS5121310.51201221IPR005539ELK domain
PROSITE profilePS5007112.471221284IPR001356Homeobox domain
SMARTSM003892.2E-11223288IPR001356Homeobox domain
SuperFamilySSF466893.72E-18223290IPR009057Homeodomain-like
CDDcd000863.00E-12224284No hitNo description
Gene3DG3DSA:1.10.10.602.0E-25226286IPR009057Homeodomain-like
PfamPF059206.3E-16241280IPR008422Homeobox KN domain
PROSITE patternPS000270259282IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEEQLPALAS GSKAATTTPF YLALDHRAST TSSSPPAEAP TPPPPSAVSD PSRQSNSERG  60
SEIIKAKIMS HPLYPALLRA FIDCRKVGAP PEIVGRLSAL ADEVEMNSDD RQEQRPADPE  120
LDQFMEIYCH MLVRYRQELT RPIQEADEFF RSMEAQIDSF SLDDNGYEGG GGSSDEEVQE  180
TADLGGLPVP ETGSPSGEDK ELKNRLLNKY SGYLSSLWRE LSRKKKKGKL PRDARQKLLH  240
WWQLHYRWPY PSELEKAALA ESTGLDAKQI NNWFINQRKR HWKPAQPTMA LTTADYRLGP  300
HG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.73010.0inflorescence| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336606.10.0uncharacterized protein LOC100193050 isoform 2
SwissprotQ75LX71e-135KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLB4FU340.0B4FU34_MAIZE; Uncharacterized protein
STRINGGRMZM2G061101_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-78KNOTTED-like from Arabidopsis thaliana