PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof008184

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bZIP

Protein Properties

Length: 297aa MW: 33024 Da PI: 8.6347

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-89244	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.5e-10	44	86	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Sof008184 44 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 86 56889*************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.6E-8	36	89	No hit	No description
SMART	SM00338	4.2E-8	42	105	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	44	88	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-7	45	86	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.5E-7	46	89	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.0E-9	128	202	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MADASPRTET STDDTDDNHG LEPGPGALGV ASDSSDRSKD KHEDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGIFISSSV DQSHSMSGNG ALAFDMEYAR 120 WLEEHNRQIS ELRAGVSAHA SDTDLRSVVD KIMSHYDEIF RAKRKCSKGR RLSRLIRHVE 180 DTSREVFLVA RRFPPSEVLK LLSTQLEPLT EQQLSGIGNL QQSSQQAEDA LSQGMEALQQ 240 SLAETLAGSL SSSGXTGNVX NYMGQMGMGM GKLGTLENFV VRLXXCGCRT LHRCKGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.21581	1e-48	bud\| crown\| inflorescence\| meristem\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312817.1	1e-156	transcription factor TGA2.3 isoform X2
Refseq	XP_021312818.1	1e-156	transcription factor TGA2.3 isoform X2
Swissprot	P23923	1e-147	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	C5XQR1	1e-155	C5XQR1_SORBI; Uncharacterized protein
STRING	Pavir.Ea01074.1.p	1e-158	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	5e-95	TGACG motif-binding factor 6

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]