PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008231
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 295aa    MW: 33123.6 Da    PI: 4.9543
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-113979PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-1894144155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a++ a+ +++g
  Sof008231  94 TQYRGIRRRP-WGKWAAEIRDPCK---GVRVWLGTYSTAEEAARAYDMAAWRIRG 144
                58********.**********854...3*********************988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.24E-3294154No hitNo description
SuperFamilySSF541711.77E-2295153IPR016177DNA-binding domain
SMARTSM003806.6E-3495160IPR001471AP2/ERF domain
PROSITE profilePS5103224.89595152IPR001471AP2/ERF domain
PfamPF008476.0E-1295144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3195153IPR001471AP2/ERF domain
PRINTSPR003672.4E-1196107IPR001471AP2/ERF domain
PRINTSPR003672.4E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MCGGAILSDL YSPVRRKVTA DDLWTESHSN KSGKNWKRKS SWEFGEDNND DFEADFEGFE  60
DGDSEEDEFQ MNSSNLVVGF NVHTAKVGSR KRRTQYRGIR RRPWGKWAAE IRDPCKGVRV  120
WLGTYSTAEE AARAYDMAAW RIRGKKAKVN FPDAITHPEK RHRGRVTRPG KKITSQEVLK  180
LDGTSVDHVI SAGSSTDDAT VVKLELPESA SLPPMSSAWL DAFELNQVNE VELLEAEGKR  240
VAEEIVGVTD MVFGNGEART ADDXGYYEPF PNFMQLPYIE GNSYENIDAL LTVTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2195159570ATERF1
3gcc_A3e-2195159570ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893SRKRRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.140040.0callus| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463183.11e-160ethylene-responsive transcription factor ERF073
RefseqXP_021308253.11e-160ethylene-responsive transcription factor ERF073
TrEMBLC5XE211e-158C5XE21_SORBI; Uncharacterized protein
STRINGSb02g039300.11e-159(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-28ethylene-responsive element binding protein