PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof008240

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Trihelix

Protein Properties

Length: 295aa MW: 31478.5 Da PI: 10.8238

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-34952	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.4	3.8e-23	25	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+laLiea+r+++e++r+g+l++++W++v++ + + ++s +qC++k+e+l+kry++++ ++ +r+++ ++p+f l+ Sof008240 25 CWTHEETLALIEAYRDRWEAVRKGNLRAADWDAVANTVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLLH 114 8***********************************99998888899**********************98443..47**9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.2E-22	24	115	No hit	No description
PROSITE profile	PS50090	6.098	26	88	IPR017877	Myb-like domain
SMART	SM00595	4.7E-4	33	117	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
XAAASSGGGI GLGGGGSGRR LPPPCWTHEE TLALIEAYRD RWEAVRKGNL RAADWDAVAN 60 TVTARCGRFP TATHKSGVQC RHKIEKLRKR YRAERSRSAG RSKGPKWPFF PLLHDLAGGG 120 VPDPSPNAIV KIKTKGPAPP ASPPSPMSSP SSSEEAVRSR SLHGLISNGG AGSGLRFTIP 180 KASRTKPAAV AAVKPERSGG GEDDAEAEAM AEVAAALRAV GGGFLRMEQR RLELSLQMEK 240 ERMESEMKRT QTMLDAQQLF LEAFSEAAAN KKAMVSPSSA GWKRTGPDRS KEPGW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.19023	0.0	leaf\| meristem\| seed\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467473.1	1e-159	trihelix transcription factor ASIL1
TrEMBL	C5WRH0	1e-157	C5WRH0_SORBI; Uncharacterized protein
STRING	Sb01g028790.1	1e-158	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-26	Trihelix family protein