PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof008355

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C3H

Protein Properties

Length: 292aa MW: 31950.9 Da PI: 8.9703

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-2988	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.5	1.5e-10	1	21	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++CkF+H++ Sof008355 1 QYYLKTGTCKFGATCKFHHPR 21 59*****************96 PP
2	zf-CCCH	37.3	4.5e-12	43	67	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Sof008355 43 EKECAYYLRTGQCKFGSTCKFHHPQ 67 679********************97 PP
3	zf-CCCH	40	6.6e-13	204	229	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Sof008355 204 DQPECQFYMKTGDCKFGAVCKFHHPR 229 689*********************96 PP
4	zf-CCCH	29.5	1.3e-09	249	275	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+ r+ Ck+G++CkF H++ Sof008355 249 PGEPICSFYNRYVMCKFGPNCKFDHPM 275 5899*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.6	1	21	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.2E-8	1	21	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.206	1	22	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-4	2	22	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.4E-5	40	67	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.619	40	68	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-7	40	69	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.7E-10	43	67	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.4E-5	46	66	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.5E-5	202	229	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.605	202	230	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.36E-6	204	231	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-9	204	229	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.0E-5	208	230	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.1E-4	248	275	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.577	248	276	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.0E-6	250	275	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.36E-5	251	276	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
QYYLKTGTCK FGATCKFHHP REKAAMATRV QLNELGYPLR PNEKECAYYL RTGQCKFGST 60 CKFHHPQPST MMVAVRGSVY SPGQSATSPG QHAYQGAVTS WPLSRSASFI ASPRWPGHSS 120 YAQVIVPPGL VQVPGWSPYT AQIGSSSSDD QQRTPGAAQY YTGSRQSGTA GIGDQGMFSS 180 YQASSVPVGL YAVQRENVFP EKPDQPECQF YMKTGDCKFG AVCKFHHPRE RIIPTPNCAL 240 SPLGLPLRPG EPICSFYNRY VMCKFGPNCK FDHPMGSAMY GHASSPTSEA PX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.3082	1e-69	callus\| inflorescence\| meristem\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450713.1	0.0	zinc finger CCCH domain-containing protein 63
Swissprot	Q2R4J4	0.0	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A1Z5RII6	0.0	A0A1Z5RII6_SORBI; Uncharacterized protein
STRING	Sb05g013190.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-108	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]