PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008392
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GATA
Protein Properties Length: 291aa    MW: 31547.8 Da    PI: 10.9027
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17339469PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-80525PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24e-17112146135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Sof008392 112 CLHCGSSSTPQWREGPLGRSTLCNACGVRYRQGRL 146
                99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-14106156IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.492106142IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-13107166No hitNo description
Gene3DG3DSA:3.30.50.107.5E-14110144IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.92E-15111167No hitNo description
PROSITE patternPS003440112137IPR000679Zinc finger, GATA-type
PfamPF003207.0E-15112146IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
XRLKAAGALR GQVQRRPAQP TSRTPARPPP PDSPVSESSP DSPIWEPGSV PDVYLVRKKP  60
LKRERPPPRP RTQPAPAPAP APAVYLVKKK KKKKAAASAR KPWRPSKSAK QCLHCGSSST  120
PQWREGPLGR STLCNACGVR YRQGRLLPEY RPIASPTFEP SEHANRHSQV LQLHRQRKSQ  180
SHQQQRPLPV EKHPPRAMDV LQLPPQRWHV KEEYPPTPLH QPLLHLVVDG SLAGGELRVG  240
GMVDAAAGAD AGHGGGGKGS DLNNAPSSLD SLLLEGPSAP LLVDGDEPLI A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.22430.0callus
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441888.21e-124serine/arginine repetitive matrix protein 1 isoform X2
RefseqXP_021302388.11e-124BAG family molecular chaperone regulator 3 isoform X1
RefseqXP_021302389.11e-126suppressor of ferric uptake 1 isoform X3
TrEMBLA0A1Z5R5011e-124A0A1Z5R501_SORBI; Uncharacterized protein
TrEMBLA0A1Z5R5Z91e-124A0A1Z5R5Z9_SORBI; Uncharacterized protein
STRINGSb08g004340.11e-125(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.11e-25GATA transcription factor 6