PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008434
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HB-other
Protein Properties Length: 290aa    MW: 31661.8 Da    PI: 8.885
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-723133727PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.54e-121361751352
                HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
   Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                + L e+F+ ++yps++ +e LA++lgLt rqV+ WF  rR
  Sof008434 136 QKLYEHFKTQQYPSRSVKESLAEELGLTFRQVSKWFETRR 175
                7899**********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-13100176IPR009057Homeodomain-like
PROSITE profilePS5007113.2121181IPR001356Homeobox domain
SMARTSM003899.4E-12123185IPR001356Homeobox domain
SuperFamilySSF466892.65E-11125176IPR009057Homeodomain-like
CDDcd000867.05E-12130175No hitNo description
PfamPF000461.6E-9136175IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
EKSTAQAKTA CSADDPMETE IDQSVVLPVS RRRQAERLDY KKLYDEAYGE ASSDSSDDEE  60
WSGKNTPIKS NEEGEADSPA GKGSSVVHHN NDLTTQSTKK SLHSLHGSVD EKHGDLTSNG  120
SNSTARKGHF GPVVNQKLYE HFKTQQYPSR SVKESLAEEL GLTFRQVSKW FETRRHFAKV  180
ASSRKGISPD KHSPENTNSP VTPSMQPKEP EGTVMEESNV SINGDATISK KAVSSKVGSR  240
KKHGKNSPGS DVGVSKVDSA EDQNPGPDLA AEKARQKAVQ QELKKKKMGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.23701e-142inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in kernels, leaves and shoots but not in roots.
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440088.20.0homeobox protein HOX1A
SwissprotP466051e-172HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLA0A1B6P9P10.0A0A1B6P9P1_SORBI; Uncharacterized protein
STRINGSb09g025810.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-11Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]