 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sof008551 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
GRAS |
| Protein Properties |
Length: 287aa MW: 32790.2 Da PI: 9.2998 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-37226 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 272.6 | 1.2e-83 | 2 | 286 | 38 | 323 |
GRAS 38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpe 137
+qRla++f+e+L+arla+++s +y++l +++ts ++ l+a++l+ + + ++ +l N++I++a+ g++++Hi+ ++i++G+QWp++l+ +a+R++
Sof008551 2 TQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---AADILQAYQLYMTAICFKRVVFLFSNRTIYNAALGKKKIHIVEYGIQYGFQWPCFLRLIADREG 98
79*************************999998...9*************************************************************** PP
GRAS 138 gppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
gpp++RiTg++ p++g ++++eetg+rL+k+A+++gvpf++++++a+++e+++ e+L+++p+E+l+Vn+ +q ++l+desv +es+rd vL+ +++++
Sof008551 99 GPPEVRITGIDLPQPGfrPTQRIEETGRRLSKYAQQFGVPFKYQAIAASKMESIRAEDLNLDPEEVLIVNCLYQFKNLMDESVVIESPRDIVLNNIRKMR 198
***************9************************************************************************************ PP
GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
P+ ++++ + + +++ F++rf eal +ysalfd+l+a+ pr+s++r+ +E+ l+gr++ nv+aceg++r+er et++ W+ r ++aG
Sof008551 199 PHTFIHAIVNGSFSAPFFVTRFREALFFYSALFDALDATTPRDSNQRMLIEENLFGRAALNVIACEGSDRVERPETYKAWQVRNQRAG 286
***********************************************************************************99998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
XTQRLAHCFA EGLQARLAGT GSMVYQSLMA KRTSAADILQ AYQLYMTAIC FKRVVFLFSN 60
RTIYNAALGK KKIHIVEYGI QYGFQWPCFL RLIADREGGP PEVRITGIDL PQPGFRPTQR 120
IEETGRRLSK YAQQFGVPFK YQAIAASKME SIRAEDLNLD PEEVLIVNCL YQFKNLMDES 180
VVIESPRDIV LNNIRKMRPH TFIHAIVNGS FSAPFFVTRF REALFFYSAL FDALDATTPR 240
DSNQRMLIEE NLFGRAALNV IACEGSDRVE RPETYKAWQV RNQRAGX
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5b3h_B | 3e-33 | 3 | 286 | 71 | 366 | Protein SHORT-ROOT |
| 5b3h_E | 3e-33 | 3 | 286 | 71 | 366 | Protein SHORT-ROOT |
| 5hyz_A | 2e-33 | 2 | 286 | 40 | 322 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.6525 | 0.0 | bud| callus| crown| inflorescence| meristem| root| seed| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
