PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008596
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bZIP
Protein Properties Length: 286aa    MW: 30899.7 Da    PI: 10.3294
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-20876PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.11.3e-20195257163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkr++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+e ++l++++++l+s++
  Sof008596 195 ERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEEWKQLQEKCDSLTSKN 257
                89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165968.3E-1937163No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-16190254No hitNo description
PfamPF001701.9E-18195257IPR004827Basic-leucine zipper domain
SMARTSM003389.5E-19195259IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.128197260IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-10198254No hitNo description
CDDcd147022.26E-18200251No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
XVPFGDSSNS STRCWSLNFP FGAGGTETNK SNKNKRKTPL KRSKGSLGSL DVVAVKNNKS  60
PAKPSASSSN QGSSQSESGS GSSSEGSSTN SKSSSRAKDG SEQGQGNDAR SKGTQSSAVE  120
PTQPSSGPVV LNPMMPFWPV PPPMAGPATT LNMGVDYWGT PASVPMHGKV IAAPTSAPSS  180
NSRDIVLSDP AIQDERELKR QKRKQSNRES ARRSRLRKQA EWEEVANRAD LLKQENSSLK  240
EEWKQLQEKC DSLTSKNTSL HVSFLFGLYL KEYISTCEKG LEHRQX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217RRSRLRK
2211218RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.130250.0bud| crown| inflorescence| meristem| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305544.11e-143bZIP transcription factor 16-like
RefseqXP_021305547.11e-143bZIP transcription factor 16-like
SwissprotQ501B24e-51BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1B6QPF21e-142A0A1B6QPF2_SORBI; Uncharacterized protein
STRINGSb01g041480.21e-143(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-36basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]