PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008601
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 286aa    MW: 30764 Da    PI: 8.0848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-42974PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS155.93.5e-48221880300
       GRAS  80 alklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelg 173
                a+k+fs+ sP+l+f+++ta qa+l+++ g+  +++H+iDfd++ G+QW+++lq+La R+    +  p +++T+++s++s++  el+  ++++a+fA+ lg
  Sof008601   2 AYKTFSDHSPVLQFTNFTATQALLDEIVGStsSCIHVIDFDLGVGGQWASFLQELAHRRgasgAALPYVKLTAFVSAASHHPLELRLARDNIAQFAADLG 101
                79*************************9988899************************976555589********************************* PP

       GRAS 174 vpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                +pfef+++   + +++++ +L   + +E++aV l            +     +++L+lvk+l Pk+v+ +++ ad+ + +F ++fl++++ ++  ++sl+
  Sof008601 102 IPFEFSAI---SADMINPAKLISASgDEVVAVVLPAGCSARA---PP----LPAILRLVKQLAPKIVIAIDHGADRVDLPFSQHFLNCFQSCMFHLESLD 191
                *******8...7899999999666669*****9999776665...44....556*********************************************8 PP

       GRAS 273 aklpreseerikvErellgreivnvvac 300
                a  + +++ ++k E++l++++i + v  
  Sof008601 192 AA-GIDADSDRKNEKFLIHPRIXDSVPG 218
                88.78999999************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.8861268IPR005202Transcription factor GRAS
PfamPF035141.2E-452218IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
XAYKTFSDHS PVLQFTNFTA TQALLDEIVG STSSCIHVID FDLGVGGQWA SFLQELAHRR  60
GASGAALPYV KLTAFVSAAS HHPLELRLAR DNIAQFAADL GIPFEFSAIS ADMINPAKLI  120
SASGDEVVAV VLPAGCSARA PPLPAILRLV KQLAPKIVIA IDHGADRVDL PFSQHFLNCF  180
QSCMFHLESL DAAGIDADSD RKNEKFLIHP RIXDSVPGWG QGGQTNCMAK MPLQLLGFPP  240
VSAQQFGRRP RPNCLLETGA RSRVFLLKKC GGPGLTLYLG KGGKPW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.157140.0bud| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454517.11e-135scarecrow-like protein 27
TrEMBLC5Y1F51e-134C5Y1F5_SORBI; Uncharacterized protein
STRINGPavir.Aa00854.1.p1e-136(Panicum virgatum)
STRINGSb04g032590.11e-135(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.15e-50GRAS family protein