PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof008605

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 286aa MW: 30208.8 Da PI: 5.9726

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-49071	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	198.1	5.6e-61	7	256	32	297
GRAS 32 spdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqa 131 +g+p+ R a+yf+eAL+ l+ + +al+p +++++++ +l a+k+fsevsP+l+f+hlt+ qa+l+++ g++r+H++Dfdi++G QW++L+q+ Sof008605 7 PTAGTPLLRSAFYFKEALRVALSP----TGEALAPPVSTPYDVVLKLGAYKAFSEVSPVLQFAHLTCVQAVLDELGGASRIHVLDFDIGMGEQWASLMQE 102 5678*****************9....8888888888899******************************************************* PP GRAS 132 LasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLkl 230 La+R ++++l++T+++s++s++ el+ ++e+L+ fA+elgv ++f v+ ++++l++ eL ++ +g+++aV+l + ++ + ++vL+l Sof008605 103 LAQR-CPAATLKVTALVSSASHHPLELNLIHENLSGFARELGVFLQFAVF---NIDTLDPAELvAITSGDTVAVHLPVGSAHVA--------AMPAVLRL 190 9.7889*************************************9...999999999945566*******99998........4566 PP GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 vk+l +kvvv v++ +d+++ +F++++++a++ +++l+ds++a ++++e+ k Er+l++++++ Sof008605 191 VKRLGAKVVVSVDRGCDRTEMPFAAHLFQAFQSCVSLLDSVDAV-GTDAEAVGKNERFLVQPHVELP 256 *************************************997.8999*********9998755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.411	1	286	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-58	7	256	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
XRLPAAPTAG TPLLRSAFYF KEALRVALSP TGEALAPPVS TPYDVVLKLG AYKAFSEVSP 60 VLQFAHLTCV QAVLDELGGA SRIHVLDFDI GMGEQWASLM QELAQRCPAA TLKVTALVSS 120 ASHHPLELNL IHENLSGFAR ELGVFLQFAV FNIDTLDPAE LVAITSGDTV AVHLPVGSAH 180 VAAMPAVLRL VKRLGAKVVV SVDRGCDRTE MPFAAHLFQA FQSCVSLLDS VDAVGTDAEA 240 VGKNERFLVQ PHVELPVVLR HPASVIDKPA AAGVGDPVLI GGVCIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-16	5	257	32	296	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.15051	1e-123	bud\| callus\| inflorescence\| root\| seed

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464970.1	1e-168	scarecrow-like protein 6
TrEMBL	C5WSJ8	1e-167	C5WSJ8_SORBI; Uncharacterized protein
STRING	Sb01g029650.1	1e-167	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	4e-65	GRAS family protein