PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008759
Common NameGAI
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 282aa    MW: 30751.4 Da    PI: 5.1746
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17335325PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS326.84.3e-100226999354
       GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                NqaIlea++g++rvH++Df+i+qGlQWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+ +g++La+fA++++v+f+++ lva +l+dle+ +L+ + 
  Sof008759   2 NQAILEAFAGCRRVHVVDFGIKQGLQWPALLQALALRPGGPPSFRLTGVGPPQHDETDALQLVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEG 101
                9***********************************************************************************************6554 PP

       GRAS 199 ......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........lpres.eeri 283
                       E++aVn+v++lhrll+++++le+    vL +v+ ++P++v+vveqea+hns++Fl+rf+e+l+yys++fdsle           p+++  +++
  Sof008759 102 ddkdeePEVIAVNSVFELHRLLAQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGAgsgqstdaSPAAAgGTDQ 197
                4555679***********************....*********************************************7775777766544444799** PP

       GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                ++++++lgr+i+nvvacegaer+erhetl++Wr+rl+ +GF+pv+l+++a+kqa++ll+ ++ +dgy+vee+
  Sof008759 198 VMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGGFGFEPVHLGSNAYKQASTLLALFNgGDGYKVEEK 269
                **********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.8551268IPR005202Transcription factor GRAS
PfamPF035141.5E-972269IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
XNQAILEAFA GCRRVHVVDF GIKQGLQWPA LLQALALRPG GPPSFRLTGV GPPQHDETDA  60
LQLVGWKLAQ FAHTIRVDFQ YRGLVAATLA DLEPFMLQPE GDDKDEEPEV IAVNSVFELH  120
RLLAQPGALE KVLGTVRAVR PRIVTVVEQE ANHNSGTFLD RFTESLHYYS TMFDSLEGAG  180
SGQSTDASPA AAGGTDQVMS EVYLGRQICN VVACEGAERT ERHETLGQWR NRLGGFGFEP  240
VHLGSNAYKQ ASTLLALFNG GDGYKVEEKG WCPDPKVAYA AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-402266117356Protein SCARECROW
5b3h_A7e-402266116355Protein SCARECROW
5b3h_D7e-402266116355Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.21190.0bud| crown| inflorescence| leaf| meristem| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466594.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLQ0HA210.0Q0HA21_SACOF; Truncated gibberellic acid-insensitive isoform 1
TrEMBLQ0HA240.0Q0HA24_SACOF; Gibberellic acid-insensitive
STRINGSb01g010660.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-106GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]