PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008793
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 281aa    MW: 30478.4 Da    PI: 10.0806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-66644PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.77e-14119157346
        AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                y+GVr +k +g+W+AeIr  +     + kr +lg+f+t  +Aa aa
  Sof008793 119 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDT-AGAASAA 157
                9*****99.**********55.....45**********.7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-10118172IPR001471AP2/ERF domain
PROSITE profilePS5103216.95118181IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-14118167IPR016177DNA-binding domain
PfamPF008472.4E-8118157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-18118169IPR001471AP2/ERF domain
PRINTSPR003676.0E-8119130IPR001471AP2/ERF domain
CDDcd000182.32E-15119150No hitNo description
PRINTSPR003676.0E-8141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAPLNHQQVL IKKVLAKKTN TKRMSGFGLK PSAALLKSRP QQQQPPAPVQ PRRRVRVLFE  60
DPDATDSDSD DEEAGAPTGP AANTKRFSFE AFVGKAPAKP VLPAATVAAC TSGGAPESYR  120
GVRLRKWGKW AAEIRNPFTG KRQWLGTFDT AGAASAAYLS ASRSFADEKR RRRGQPXAGF  180
LTSYFGKRHP DGVLFVVHLD CFFAHPSPSS VIESTKAAAP NPQSPEPVAT PTPPVGLPLP  240
STESAQVPDD PEFYQELLRG LQLPDIYPMD FRAGLDPLDV F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968058.11e-129ethylene-responsive transcription factor ERF118
TrEMBLK3XJW31e-128K3XJW3_SETIT; Uncharacterized protein
STRINGSi002186m1e-129(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.22e-13related to AP2 2