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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sof008873 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
GRAS |
| Protein Properties |
Length: 279aa MW: 32338.2 Da PI: 7.9981 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Sof#S17312601 | PU_ref | Unigene | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 250 | 8.9e-77 | 2 | 257 | 111 | 364 |
GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
+vHi+D++i +G+QWp++l+ +a+R++gpp++RiTg++ p++g ++++eetg+rL+k+A+++gvpf++++++++++e+++ e+L+++p+E+l+Vn+ +
Sof008873 2 KVHIVDYGIHYGFQWPCFLRWIADREGGPPEVRITGIDLPQPGfrPNQRIEETGRRLSKYAQQFGVPFKYQAIAVSKMESIRAEDLNLDPEEVLIVNCLY 101
79****************************************9********************************************************* PP
GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
q ++l+desv +es+rd vL+ +++++P+ ++++ + + +++ F++rf eal +ysalfd+l+++ pr+s++r+ +E+ l+gr++ nv+aceg++r+er
Sof008873 102 QFKNLMDESVVIESPRDIVLNNIRKMRPHTFIHAIVNGSFSAPFFVTRFREALFFYSALFDALDTTTPRDSNQRMLIEENLFGRAALNVIACEGTDRVER 201
**************************************************************************************************** PP
GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
et+++W+ r ++aG+k+ p++ +++k ++ + ++ + + + ++++l++gWk+
Sof008873 202 PETYKQWQVRNQRAGLKQQPVNPDVVKFVRNKVXDMYHKDFVNDVDHHWLLQGWKG 257
*************************************888**************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
XKVHIVDYGI HYGFQWPCFL RWIADREGGP PEVRITGIDL PQPGFRPNQR IEETGRRLSK 60
YAQQFGVPFK YQAIAVSKME SIRAEDLNLD PEEVLIVNCL YQFKNLMDES VVIESPRDIV 120
LNNIRKMRPH TFIHAIVNGS FSAPFFVTRF REALFFYSAL FDALDTTTPR DSNQRMLIEE 180
NLFGRAALNV IACEGTDRVE RPETYKQWQV RNQRAGLKQQ PVNPDVVKFV RNKVXDMYHK 240
DFVNDVDHHW LLQGWKGPQS LCHLDLGGQG KPPSYFLAX
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.6525 | 0.0 | bud| callus| crown| inflorescence| meristem| root| seed| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
