PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008909
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 278aa    MW: 30369.3 Da    PI: 9.7461
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-97862PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22.1e-131381781255
        AP2  12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +W+AeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  Sof008909 138 EXKWAAEIRDPH----KgTRVWLGTFNTAEDAARAYDVEARRLRG 178
                479*******72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-26128186IPR001471AP2/ERF domain
PROSITE profilePS5103219.796129186IPR001471AP2/ERF domain
CDDcd000189.91E-22129188No hitNo description
SMARTSM003809.6E-27129192IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-18129187IPR016177DNA-binding domain
PRINTSPR003676.8E-6130141IPR001471AP2/ERF domain
PfamPF008473.4E-6137178IPR001471AP2/ERF domain
PRINTSPR003676.8E-6152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
XVEAPPLNYW VDPRVLCLAT VCGGAHTREL IPPTRRVASK PATDGHLWPV SSKKAGIGSG  60
SNKRHRHEYA DDDFEAAFEE SDDDFDAHED DEDHPDHFVF SSKSAFSPAH DGRGARAAAT  120
QRTKRGHRHF RGIGSGPEXK WAAEIRDPHK GTRVWLGTFN TAEDAARAYD VEARRLRGSK  180
AKVNFPAAGA RARRGKGNPR TAPKPQQHHA AAAQALPALL LRREKGHEGV AVKPETMDTF  240
DVGRFFNMTI PTFQSVLPTG MKSSLTGSTA ASEIWTSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-17128186160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-17128186463ATERF1
3gcc_A8e-17128186463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.190280.0crown| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313148.11e-107ethylene-responsive transcription factor 1-like
TrEMBLA0A1B6QQ351e-106A0A1B6QQ35_SORBI; Uncharacterized protein
STRINGSb01g045060.21e-107(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-23ERF family protein