PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof008937

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bZIP

Protein Properties

Length: 277aa MW: 29258.2 Da PI: 6.1739

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-227133726	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3.2e-11	153	196	4	47
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L Sof008937 153 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSP 196 5999*********************************9877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-14	150	214	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.795	152	204	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.03E-12	154	208	No hit	No description
Pfam	PF00170	1.0E-9	154	199	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.5E-14	154	208	No hit	No description
CDD	cd14703	6.95E-24	155	206	No hit	No description
PROSITE pattern	PS00036	0	157	172	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MAQLPPRIPT AVHHWPEGGQ HGAAAAWADD FAEFAASRRG AHRRSLSDSV AFVEVAPADG 60 AAGEFDRLDD DQLMSMFPDE AGGGGGSSSA PGSENGGSSD SDGDKRVGGA PAGGTTTGNG 120 NACDGEQNEA AGDAQAPATG PAAAASTELI RDPKRVKRIL ANRQSAQRSR VRKLQYISEL 180 ERSVTTLQNE VSVLSPRVAF LDQQRTILTV GNSHLKQRIA ALSQDKIFKD AHQEALKKEI 240 ERLRQVYEQQ NLKMSAGAAA SDHGPPSPVR AEKELMS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269\|PubMed:18065552}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456373.1	1e-166	basic leucine zipper 6
Swissprot	Q5JMK6	1e-115	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	C5XK77	1e-165	C5XK77_SORBI; Uncharacterized protein
STRING	Sb03g034950.1	1e-165	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	2e-55	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]