 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sof008999 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
GRAS |
| Protein Properties |
Length: 276aa MW: 32117.3 Da PI: 7.1965 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-846133733 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 255.6 | 1.8e-78 | 5 | 267 | 113 | 373 |
GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlql 210
Hi+ ++i++G+QWp+ l+ +a+R++gpp++RiTg++ p++g ++++eetg+rL+k+A+++gvpf++++++a+++e+++ e+L+++p+E+l+Vn+ +q
Sof008999 5 HIVEYGINYGFQWPCYLRWIADREGGPPEVRITGIDLPQPGfrPTQRIEETGRRLSKYAQQFGVPFKYQAIAASKMESIRAEDLNLDPEEVLIVNCLYQF 104
****************************************9*********************************************************** PP
GRAS 211 hrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310
++l+desv +es+rd vL+ +++++P+ ++++ + +++ F++rf eal +ysalfd+l+++ pr+s++r+ +E+ l+gr++ nv+aceg++r+er e
Sof008999 105 KNLMDESVVIESPRDIVLNNIRKMRPHTFIHAIVNGTFSAPFFATRFREALFFYSALFDALDVTTPRDSNQRMLIEENLFGRAALNVIACEGTDRVERPE 204
**************************************************************************************************** PP
GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
t+++W+ r ++aG+k+ pl+ ++++ ++ ++ + + + ++ ++++l+ gWk+r L+++S W
Sof008999 205 TYKQWQVRNQRAGLKQQPLNPDVVQVVRNKVKDLYHKDFVIDVDHHWLLHGWKGRILYAISTW 267
***********************************888************************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
XREDHIVEYG INYGFQWPCY LRWIADREGG PPEVRITGID LPQPGFRPTQ RIEETGRRLS 60
KYAQQFGVPF KYQAIAASKM ESIRAEDLNL DPEEVLIVNC LYQFKNLMDE SVVIESPRDI 120
VLNNIRKMRP HTFIHAIVNG TFSAPFFATR FREALFFYSA LFDALDVTTP RDSNQRMLIE 180
ENLFGRAALN VIACEGTDRV ERPETYKQWQ VRNQRAGLKQ QPLNPDVVQV VRNKVKDLYH 240
KDFVIDVDHH WLLHGWKGRI LYAISTWVAN DAPSNF
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.6525 | 0.0 | bud| callus| crown| inflorescence| meristem| root| seed| stem |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
