PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof009457

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 267aa MW: 29099.9 Da PI: 4.5253

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-106681	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	56.7	5.1e-18	174	264	1	94
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+++L++c +av+++d +++ l+++ls+l+s +gdpmqRl ay++e++ arl++s+s lyk+l+++e + sse +++++ ++e++ + Sof009457 174 LKQVLIACGKAVAEDDVFATELLISELSQLVSVSGDPMQRLGAYMLEGIVARLSSSGSMLYKSLKCKEPT---SSELMSYMQSLYEICHSTSLL 264 5799***************************************************************9...999*********9666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.571	148	267	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-15	174	264	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MSARDSNHSY KCSEDSQMPY YNNSAPLGEN GRIHVMQNNL GNRYSSPDTG SQRINNSNPQ 60 VFEAQYCTLE SSSANGVYPA QSSTSSHSIS PLNGSPLSQY DSHSDHAYSS PPTASCLTEV 120 ADLQTKLKEL ENAILVPGLD LDIISDSPES LLQANVQLRP DNWRQLLGID AXDLKQVLIA 180 CGKAVAEDDV FATELLISEL SQLVSVSGDP MQRLGAYMLE GIVARLSSSG SMLYKSLKCK 240 EPTSSELMSY MQSLYEICHS TSLLHVX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.10758	0.0	crown\| meristem\| seed\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983228.1	1e-148	scarecrow-like protein 21
Refseq	XP_004983229.1	1e-148	scarecrow-like protein 21
TrEMBL	A0A0A9EAW1	1e-151	A0A0A9EAW1_ARUDO; GRAS54
STRING	Si035053m	1e-148	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	5e-36	scarecrow-like 5