PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof009665

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C3H

Protein Properties

Length: 264aa MW: 29216.2 Da PI: 6.5116

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-88396	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.9e-06	64	76	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 CkyG +C+F+H+ Sof009665 64 SCKYGTSCRFSHD 76 6***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MLTVKNAFLR ADIVREASKE EGGGGAVVKV EKKSKRQMKH ERIDEQKSTF HLXVEVGKSG 60 NVDSCKYGTS CRFSHDINAY LSQKPADLEG TCPFTSLGQL CPYGITCRFL STHKDTLAPQ 120 NHPEGNHERN PLSKEIQKLL WKSKYKFPKA TAQIKLLGLK DGNKNKAEAA NDDNPDETCE 180 LNGDDKTSLS TIPVNVEPDP TCKEIDNSEG QPLVVNSVES VEPRPSKKSK VEVDETXDHG 240 TGIHDNEAES EVGNLIQWSK SFLK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.14952	0.0	callus\| inflorescence\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001145737.1	1e-143	uncharacterized LOC100279244
Swissprot	Q7XT07	3e-95	DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A1D6J4J4	1e-144	A0A1D6J4J4_MAIZE; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
TrEMBL	A0A3L6GF93	1e-143	A0A3L6GF93_MAIZE; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	GRMZM2G120740_P03	1e-142	(Zea mays)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]