PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof009733
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bZIP
Protein Properties Length: 262aa    MW: 29089.7 Da    PI: 6.6427
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-23118PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31.1e-10117147535
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekv 35 
                ++ rr+++NReAAr+sR+RKka+i++Le+  
  Sof009733 117 RVLRRLAQNREAARKSRLRKKAYIQQLETSR 147
                6789***********************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.4E-8110159No hitNo description
SMARTSM003385.5E-6113173IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.772115159IPR004827Basic-leucine zipper domain
PfamPF001708.4E-8117151IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-6117158No hitNo description
PROSITE patternPS000360120135IPR004827Basic-leucine zipper domain
PfamPF141441.3E-12203258IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MELYSGYLED HFNLHKLSIG SAASPPEYMT SASPAQFAVV PLRMGYGRPA PSTAPAPVTA  60
GMWSSEAFKV VDSGHATSAS TVMETDTKFE TRLEDVPQAA LEPGRSTDQE TSKPPERVLR  120
RLAQNREAAR KSRLRKKAYI QQLETSRMKL AQLELELQRA RQQGAYANGN MGDSALGYTG  180
SIDPGVTAFE IEYSHWVDEQ KRHTAELMSA LQGQQTSELE LRLLVETGLS NYEHLFRIKA  240
MAANADVFHV MSGLWKDPRR EG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.130100.0bud| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318936.11e-168transcription factor TGAL6-like isoform X1
SwissprotA0A0P0WFC81e-118TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBLA0A1B6PNH51e-167A0A1B6PNH5_SORBI; Uncharacterized protein
STRINGSb06g030100.11e-168(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.25e-50TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Okada A, et al.
    OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.
    J. Biol. Chem., 2009. 284(39): p. 26510-8
    [PMID:19635799]
  3. Okada K
    The biosynthesis of isoprenoids and the mechanisms regulating it in plants.
    Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25
    [PMID:21737944]
  4. Yamane H
    Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.
    Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8
    [PMID:23748776]
  5. Miyamoto K, et al.
    Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.
    PLoS ONE, 2014. 9(8): p. e105823
    [PMID:25157897]
  6. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]