PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof009737
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family Trihelix
Protein Properties Length: 262aa    MW: 27999.8 Da    PI: 9.3436
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-31488PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.86.8e-1467153186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk++ +++        s +++f +l+
  Sof009737  67 CWSDGETAALVAAWGSRYVELNRGNLRQKQWQEVADAVntrrgasARRRPPRTDVQCKNRVDTLKKKYKAELARNAP------SGWSFFPELD 153
                7******************************************99999999********************999996......4699999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-2665155No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
XSTTTSVLVA SSGLGFGARS XFRAPESEME VREMAMAAAA AAASVGGGGG GVKLPPPNPN  60
LPYREDCWSD GETAALVAAW GSRYVELNRG NLRQKQWQEV ADAVNTRRGA SARRRPPRTD  120
VQCKNRVDTL KKKYKAELAR NAPSGWSFFP ELDRLVGPTL SASASKRPLP LPAPQFALPI  180
HPPAVRRPPS PFAAIVLPAG RYGFASTQLP SWVPAPCCCP DSERNCSCGG FLSDSEDLDD  240
GRGNNNYNLL RSPSGWGSAF SX
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-30sequence-specific DNA binding transcription factors