PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof009766

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB

Protein Properties

Length: 262aa MW: 28257.6 Da PI: 9.9385

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17294489	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.6e-17	15	62	2	48
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 g+W++eEde l +v+++G+g +W + +++ g++R++k+c++rw++yl Sof009766 15 GPWSPEEDEALRSYVQRHGSGgNWIAMPKKAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP
2	Myb_DNA-binding	41.2	3.9e-13	69	140	2	46
SSS-HHHHHHHHHHHHHTTTT............................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg............................tWktIartmgkgRtlkqcksrwqk 46 g +T+eEd + + +qlG++ +W++Ia+ m gRt++++k++w++ Sof009766 69 GGFTAEEDAVIMSLYTQLGSKxsrpppxissilwflddgmpirhlagtrRWSLIASQME-GRTDNDVKNHWNT 140 569******************************************************.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.291	9	66	IPR017930	Myb domain
SMART	SM00717	8.8E-12	13	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.87E-21	15	66	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-24	15	69	IPR009057	Homeodomain-like
Pfam	PF00249	8.1E-16	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	6.86E-10	16	62	No hit	No description
PROSITE profile	PS50090	8.804	63	142	IPR017877	Myb-like domain
SMART	SM00717	1.3E-7	67	144	IPR001005	SANT/Myb domain
Pfam	PF00249	7.7E-9	69	140	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-20	70	146	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.87E-21	114	143	IPR009057	Homeodomain-like
CDD	cd00167	2.91E-7	115	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGRTPCCDRA AVKQGPWSPE EDEALRSYVQ RHGSGGNWIA MPKKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTAEEDAVIM SLYTQLGSKX SRPPPXISSI LWFLDDGMPI RHLAGTRRWS 120 LIASQMEGRT DNDVKNHWNT KLKKRLLAAA LSPSPAPHAR LPAPAPAFST GNALSLFPSL 180 DIPTVKMEAY TCDDFLAPAL GDPFAAGADG FTLGASAGLS ASTGSTGAKA PGKRPFFLVD 240 FLGGPRTSCP PVDQFQVPRG VX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.16645	0.0	bud\| root\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269\|PubMed:16461581}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455023.1	1e-108	transcription factor RAX2
Swissprot	Q9SJL7	7e-59	RAX2_ARATH; Transcription factor RAX2
TrEMBL	I1TE94	1e-117	I1TE94_9POAL; MYB transcription factor MYB17 (Fragment)
STRING	Sb03g003120.1	1e-107	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	6e-56	myb domain protein 36

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]