PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof009780
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family B3
Protein Properties Length: 262aa    MW: 30136.6 Da    PI: 8.4869
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17460720PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-17491281198
                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 k   +++p kf+++ +g+   ++   l+ +sg++W v +  +k+ ++ ++++GW +Fv+a++L+e+D v+F+++g+ +f   v +++
  Sof009780  49 VK--GISIPEKFVSNLNGQ--ITRVFNLKAPSGETWLVDV--TKNADELLFKSGWDNFVRAHELQENDLVIFTRSGNCSF--DVLILD 128
                33..38*******877777..55689**************..*******************************9999888..777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.79E-2233132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-2235132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.32437130IPR003340B3 DNA binding domain
CDDcd100171.58E-1839128No hitNo description
SMARTSM010191.2E-1140130IPR003340B3 DNA binding domain
PfamPF023627.5E-1541125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
XQVTRECRMN KMAPHLRCKS CRKWQEHCYQ EHMTRERVSF FKLMTGDFVK GISIPEKFVS  60
NLNGQITRVF NLKAPSGETW LVDVTKNADE LLFKSGWDNF VRAHELQEND LVIFTRSGNC  120
SFDVLILDSS GCEKVSCFFT TKKGPCMHKH FNGRVHEQAE HSMLSDSDDL GMPLRLVASP  180
HRASTSKKGG KTKPRKEPES PINSNYHIKQ EAMSDEEQSD KDRLADSSCC YYYYSKSANI  240
LTGGERDKIF SWCRFNRQSS IX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.152460.0inflorescence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442429.21e-161B3 domain-containing protein Os12g0592300
SwissprotQ2QMT23e-83Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A1B6PDS91e-159A0A1B6PDS9_SORBI; Uncharacterized protein
STRINGSb08g019930.11e-153(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-23B3 family protein