PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof009787

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 261aa MW: 28681.7 Da PI: 6.0836

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-106680	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	276.3	9.6e-85	2	254	7	261
GRAS 7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106 +c +av+++d +++ l+++l +l+s +gdpmqRl ay++e++ arl++s+s lyk+l+++e + sse +++++l++e++P++kf+++ aN aI ea+ Sof009787 2 ACGKAVAENDVFATELLISELGQLVSVSGDPMQRLGAYMLEGIVARLSSSGSMLYKSLKCKEPT---SSELMSYMHLLYEICPFYKFGYMSANGAIAEAI 98 699**********************************************************9...9**************************** PP GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204 +ge+ vHiiDf+i qG QW++L qaLa+Rp+gpp +RiTg+++++s + l +g+ L ++A+++g+pfefn+ v + +++el++L+++pgE +aV Sof009787 99 KGENFVHIIDFQIAQGSQWVTLVQALAARPGGPPYIRITGIDDSNSAyaRGGGLDIVGRMLCNVAKSCGLPFEFNA-VPAASHEVELQHLAIRPGEIIAV 197 ***************************************988899999********************.7999*************** PP GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 n+++qlh+++desvs+e++rd++++++ks+sP+vv++veqe+++n+++F+ r +e Sof009787 198 NFAYQLHHVPDESVSMENHRDRIIRMIKSISPRVVTLVEQESNTNTAPFFPRYMENS 254 **************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.963	1	261	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-82	2	254	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
XACGKAVAEN DVFATELLIS ELGQLVSVSG DPMQRLGAYM LEGIVARLSS SGSMLYKSLK 60 CKEPTSSELM SYMHLLYEIC PFYKFGYMSA NGAIAEAIKG ENFVHIIDFQ IAQGSQWVTL 120 VQALAARPGG PPYIRITGID DSNSAYARGG GLDIVGRMLC NVAKSCGLPF EFNAVPAASH 180 EVELQHLAIR PGEIIAVNFA YQLHHVPDES VSMENHRDRI IRMIKSISPR VVTLVEQESN 240 TNTAPFFPRY MENSQLLYSH V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-37	3	252	26	265	Protein SCARECROW
5b3h_A	2e-37	3	252	25	264	Protein SCARECROW
5b3h_D	2e-37	3	252	25	264	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001183658.1	1e-177	uncharacterized protein LOC100502252
Refseq	XP_020394849.1	1e-177	hypothetical protein
Swissprot	Q9LDL7	1e-125	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A317YB58	1e-176	A0A317YB58_MAIZE; Chitin-inducible gibberellin-responsive protein 2
TrEMBL	C4J9P5	1e-176	C4J9P5_MAIZE; Uncharacterized protein
STRING	GRMZM2G116638_P01	1e-177	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-128	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]