PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof009888

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB

Protein Properties

Length: 260aa MW: 29697.9 Da PI: 11.3211

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-7711	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.9e-18	67	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Sof009888 67 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 114 79********************************************97 PP
2	Myb_DNA-binding	54.6	2.6e-17	120	165	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Sof009888 120 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 165 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.259	62	114	IPR017930	Myb domain
SuperFamily	SSF46689	4.67E-29	66	161	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-15	66	116	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-16	67	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-19	68	121	IPR009057	Homeodomain-like
CDD	cd00167	4.37E-11	69	114	No hit	No description
PROSITE profile	PS51294	25.552	115	169	IPR017930	Myb domain
SMART	SM00717	2.2E-16	119	167	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-15	120	164	IPR001005	SANT/Myb domain
CDD	cd00167	2.13E-11	122	165	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-23	122	168	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
XLLLPLLFLP NRLDFIKIIL KLEPTSTQRK KSKKTGSQPI QGGVSSVRAV SSYRRVDMVT 60 VREETRKGPW TEQEDLQLVC TVRLFGERRW DFIAKVSGLN RTGKSCRLRW VNYLHPGLKR 120 GRMSPHEERL ILELHARWGN RWSRIARRLP GRTDNEIKNY WRTHMRKKAQ ERKRNMSPSS 180 SSSSLTYQSG YPDTPSTIGV EGQELHGGSG CITSILKGTP PDMDGYPWTR YGWKLSARVA 240 LRGGFVGGNK KGAKAFANLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-27	64	169	1	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-27	29	169	11	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-27	29	169	11	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-27	67	169	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-27	67	169	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321598.1	1e-120	myb-related protein MYBAS2-like isoform X2
Swissprot	Q4JL76	1e-101	MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBL	I1TE95	1e-148	I1TE95_9POAL; MYB transcription factor MYB14
STRING	Sb08g018580.1	1e-119	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	5e-71	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]