PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof009964

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

EIL

Protein Properties

Length: 259aa MW: 29267.1 Da PI: 8.4641

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17348701	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	174	1.5e-53	115	255	1	145
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekve 100 e+l +rmwkd+++l+r+ker+++l ++a++++ + + +++qa rkkmsra DgiLkYMlk m+vcna+GfvYgiip+kgkpv+gasd+++aW kekv+ Sof009964 115 EDLARRMWKDRVRLRRIKERQQKLA-LQQAELEKLRPKPISDQAMRKKMSRAHDGILKYMLKLMQVCNARGFVYGIIPDKGKPVSGASDNIKAWGKEKVK 213 89*****************9865.66667***************************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHH CS EIN3 101 fdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlg 145 fd+ngpa i ky+++nl+++ ++s +++++hsl++ q++ +g Sof009964 214 FDKNGPAGIEKYESDNLVSAYAQSG---GTKNPHSLEDFQEAPFG 255 **************9988888...88********98665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.3E-54	115	255	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
PEERRIFSSI NPANHSFERP FDEKLSSIAP AWLSLSPPGP NFVWTGCCDP XAGWGSAASH 60 RRLPRFEFNR VTKVAVLMDQ LAMLATELGD SSDFEVEGIQ NLTENDVSDE EIEPEDLARR 120 MWKDRVRLRR IKERQQKLAL QQAELEKLRP KPISDQAMRK KMSRAHDGIL KYMLKLMQVC 180 NARGFVYGII PDKGKPVSGA SDNIKAWGKE KVKFDKNGPA GIEKYESDNL VSAYAQSGGT 240 KNPHSLEDFQ EAPFGLRVF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.9200	0.0	crown

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462568.1	1e-111	ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_021308896.1	1e-111	ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_021308897.1	1e-111	ETHYLENE INSENSITIVE 3-like 3 protein
Swissprot	O23116	2e-59	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	C5X3X3	1e-109	C5X3X3_SORBI; Uncharacterized protein
STRING	Sb02g028390.1	1e-110	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	8e-57	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]