PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof009966
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 259aa    MW: 27980 Da    PI: 7.8248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17381387PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-1980130155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +gy+GVr++  +g+WvAeIr+p   + r  r +lg+f t e+Aa+a+++a+++++g
  Sof009966  80 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTSEDAARAYDEAARAMYG 130
                79*****999.**********8...2.489**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.33E-2880138No hitNo description
PfamPF008479.6E-1480130IPR001471AP2/ERF domain
SMARTSM003801.5E-3281144IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2181139IPR016177DNA-binding domain
PROSITE profilePS5103222.47181138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3182139IPR001471AP2/ERF domain
PRINTSPR003671.8E-108293IPR001471AP2/ERF domain
PRINTSPR003671.8E-10104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
IWSRGQYCGA WFRQNNSRKK RPRRSRDGPT SVAAVIQRWA EHNKQLEHDP EGAKQPRKAP  60
AMGSKKGCMK GKGGPDNTQC GYRGVRQRTW GKWVAEIREP NRVNRLWLGT FPTSEDAARA  120
YDEAARAMYG DLARTNFPRQ HAVTYAQAAL ASTSVQAAPT AVEALGPGTS CESTTTSNHS  180
DIASTSHKPE ASDSLSSLKA EWPEALEAGS SGIQAGTPSV ADKVFVTLEP ITNLSDGGDG  240
CVTNLPDCGD DGFDVEEML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1582138663ATERF1
3gcc_A2e-1582138663ATERF1
5wx9_A3e-15821411575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.193580.0callus| inflorescence| meristem| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302431.11e-150dehydration-responsive element-binding protein 2B-like isoform X1
RefseqXP_021302432.11e-150dehydration-responsive element-binding protein 2B-like isoform X2
RefseqXP_021302434.11e-151dehydration-responsive element-binding protein 2B-like isoform X4
SwissprotQ5W6R42e-60DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLJ7FAA81e-149J7FAA8_SORBI; Dehydration responsive element binding protein 2 isoform a
STRINGSb09g016150.21e-115(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-30DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]