PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010036
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 258aa    MW: 29696.4 Da    PI: 9.2571
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17333136PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82e-091571941954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +e+  L++++gLt +q+++WF N R +
  Sof010036 157 FEHflHPYPKDSEKIMLSRQTGLTRSQISNWFINARVR 194
                665559******************************98 PP
2BELL122.71.5e-392091172
       BELL  1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
               e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Sof010036 20 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQLVMSSFDMVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 91
               689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-23189IPR006563POX domain
PfamPF075265.7E-38887IPR006563POX domain
PROSITE profilePS5007112.001135198IPR001356Homeobox domain
CDDcd000866.68E-11138199No hitNo description
SMARTSM003892.0E-9138202IPR001356Homeobox domain
SuperFamilySSF466891.54E-17139204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28141204IPR009057Homeodomain-like
PfamPF059203.5E-18155194IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
XSSDPQESGA NAAAELSTAE KQELQNKMAK LMAMLDEVDR KYKHYYHQMQ LVMSSFDMVA  60
GSGAAKPYTA VALQTISRHF RCLKDAINDQ ISVIRKKLGE DDNTSGKEGK LTRLRYIDQQ  120
IRQQRAFQQY GMLQQNAWRP QRGLPENSVS ILRAWLFEHF LHPYPKDSEK IMLSRQTGLT  180
RSQISNWFIN ARVRLWKPMI EDMYKEEVGE AELDSNSSSD NGQRNKDKAP SFGRXRRPET  240
STSQXCQTSQ LDEIQSHX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16144201562Homeobox protein Meis2
3k2a_B3e-16144201562Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.227830.0root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320793.11e-175BEL1-like homeodomain protein 7
RefseqXP_021320799.11e-175BEL1-like homeodomain protein 7
SwissprotQ9SIW11e-107BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLC5WPM91e-174C5WPM9_SORBI; Uncharacterized protein
STRINGSb01g011960.11e-175(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-101BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]