PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof010049

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bHLH

Protein Properties

Length: 257aa MW: 27819.4 Da PI: 5.316

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-106154	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.4e-05	42	91	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ + erE+ Rd++N+ f eL ++l + + Ka++L A + +++L Sof010049 42 KKTHKAEREKLKRDQLNDLFVELGSMLDLD----RQNTGKATVLGDAARVLRDL 91 678899********************9886....56677888888877777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.15E-11	39	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-8	39	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.906	41	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.76E-4	42	91	No hit	No description
SMART	SM00353	0.0032	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
XNILGMVADT ESSDSLPGSS NAASDTPANG SIHQKSHETP PKKTHKAERE KLKRDQLNDL 60 FVELGSMLDL DRQNTGKATV LGDAARVLRD LITQVESLRK EQSALVSERQ YVSSEKNELQ 120 EENNSLISQI SELQNDLCAR MRNSSLNQNS LGMPLPVANT VGPDLATHPM PQQMWSNIPN 180 LSSVAMTHPS NTATLLHSQD HSADAGQGYA PQPRELQLFP GASSSPERRC SRLGSDQATS 240 LSPADSLPGQ LCLXPPQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.9514	0.0	callus\| inflorescence\| meristem\| seed

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451069.1	1e-149	transcription factor bHLH11 isoform X2
Refseq	XP_021317141.1	1e-149	transcription factor bHLH11 isoform X2
TrEMBL	C5Y5V2	1e-147	C5Y5V2_SORBI; Uncharacterized protein
STRING	Sb05g023730.1	1e-148	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	5e-35	bHLH family protein