PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof010095

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 257aa MW: 27844.8 Da PI: 8.3007

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17280473	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	73.9	3.1e-23	120	251	2	135
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 v++L e+A+ ++gd+ a+++Larl+ a +g+p+ R a+yf+eAL+ l+ + +al+p +++++++ +l a+k+f+evsP+l+f+hlt+ Sof010095 120 VDQLAEAAKLAEAGDAFXAREILARLNYWfpaAPTAGTPLLRSAFYFKEALRVALSP----TGEALAPPVSTPYDVVLKLGAYKAFYEVSPVLQFAHLTC 215 689***********************999455566***************9....8888888888899********************** PP GRAS 99 NqaIleavege....ervHiiDfdisqGlQWpaLlqaLasR 135 + + ++ r+H i++G QW++++q+La+R Sof010095 216 VKRCWTNFGRQpesrARLH-----IGMGHQWASFIQELAQR 251 ****99877667777.....6************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.585	93	257	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-20	120	251	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
VMDPPVLELD HTPSMMSPAF GTSMPFAPAM EDVKAVPFVH TPNFLVHHHQ HHPQPHAAFF 60 GSHSHPSLDA APQPKRPHPM AGAPAPKLPS FPGPVAQAGG FAPALKPKAE VANDEVTAAV 120 DQLAEAAKLA EAGDAFXARE ILARLNYWFP AAPTAGTPLL RSAFYFKEAL RVALSPTGEA 180 LAPPVSTPYD VVLKLGAYKA FYEVSPVLQF AHLTCVKRCW TNFGRQPESR ARLHIGMGHQ 240 WASFIQELAQ RFPRGTI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.15051	0.0	bud\| callus\| inflorescence\| root\| seed

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464970.1	1e-125	scarecrow-like protein 6
TrEMBL	C5WSJ8	1e-124	C5WSJ8_SORBI; Uncharacterized protein
STRING	Sb01g029650.1	1e-125	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	8e-19	GRAS family protein