PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010123
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 256aa    MW: 25884 Da    PI: 7.405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-465133733PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-103384156
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++y+GVr  + rg +  eIrdp    k+ + +l + +taeeAa+a+ aa+++++g+
  Sof010123 33 PHYRGVRMLS-RGLYSREIRDPA---KKSSLWLDTCDTAEEAARAYYAAAREYRGA 84
               68*****998.8*********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.3573491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-203491IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-143492IPR016177DNA-binding domain
SMARTSM003802.4E-173497IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAPRTSEKTM TPAEAGARGL SLSVGCGPGA GSPHYRGVRM LSRGLYSREI RDPAKKSSLW  60
LDTCDTAEEA ARAYYAAARE YRGAKAKTNF PFPSSCMTLA AGAGAGTGTL PAAAAVTGGG  120
SRSSNSSTVE SFSGGSDVQA APMQAMPLPP SLELDLFHRA VAAGTGAGGA AVRFPFNSYP  180
VTHPYYFFGQ AAAAAAAGCH MLKLAPTVTV AAVAQSDSDS SSVVDLSPSP LAAVSTTKAA  240
AFDLDLNCPP PAEAEA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.181410.0crown| leaf| meristem| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441319.11e-100ethylene-responsive transcription factor 8
TrEMBLC5Z0C23e-99C5Z0C2_SORBI; Uncharacterized protein
STRINGSb09g024400.11e-100(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-13erf domain protein 9