PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010153
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 256aa    MW: 28590.8 Da    PI: 10.904
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17455376PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.84.9e-101271641954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Sof010153 127 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 164
                665559******************************98 PP
2BELL94.59.6e-311581572
       BELL 15 lleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
               +l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia+q+
  Sof010153  1 MLDEVEQRYRQYHRQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIASQV 58
               9*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.3E-5156IPR006563POX domain
PfamPF075261.5E-26155IPR006563POX domain
PROSITE profilePS5007111.969105168IPR001356Homeobox domain
SMARTSM003891.2E-9108172IPR001356Homeobox domain
CDDcd000862.25E-12108169No hitNo description
SuperFamilySSF466898.55E-18109175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-29111174IPR009057Homeodomain-like
PfamPF059207.1E-19125164IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLDEVEQRYR QYHRQMQAVS SSFEAAAGAG SARTYTALAL RTISRQFRCL RDAIASQVRA  60
ASRALGEDAD AAVAAGGRTV GSRLRYIDHQ LRQQRALQQL GMMQGGAWRP QRGLPERSVS  120
ILRAWLFEHF LHPYPKDSDK IMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYLEETKD  180
HEVEVAAATN KGKFVAAXSK SGDTVDGVTP KADAMFKFPV RLGSGRGAEN AFTNKGIHGF  240
FLVGARXXRG TTRIFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-17114172563Homeobox protein Meis2
3k2a_B3e-17114172563Homeobox protein Meis2
4xrm_A3e-17114172563Homeobox protein Meis2
4xrm_B3e-17114172563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.184860.0bud| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344816.11e-124BEL1-like homeodomain protein 1
RefseqXP_008679683.11e-124BEL1-like homeodomain protein 1 isoform X1
RefseqXP_008679685.11e-124BEL1-like homeodomain protein 1 isoform X1
RefseqXP_020408426.11e-124BEL1-like homeodomain protein 1 isoform X1
SwissprotQ9SJ564e-88BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A3L6F7761e-123A0A3L6F776_MAIZE; BEL1-like homeodomain protein 1
STRINGGRMZM2G458728_P041e-124(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-60BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]