PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010295
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 254aa    MW: 27600.2 Da    PI: 6.087
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17442170PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.26.7e-83124137279
       GRAS  37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                p++Rl ay++e+L arla s+s++ykal+++e +   ss+ l+++++++e++P++kf+++ aN aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp
  Sof010295   1 PLERLGAYMVEGLVARLAASGSSIYKALKCKEPR---SSDLLSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHIAQGTQWISLLQALAARP 97 
                689******************************9...9************************************************************** PP

       GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                +gpp +RiTg++++ s   +   le +g+rL+++A   +vpf+f++ va + +++e e+L + pgEa+aVn+ l+lh+++d +vs++++rd++L lv +l
  Sof010295  98 GGPPFVRITGIDDSVSAyaRGGGLELVGRRLSHIAGLYKVPFQFDA-VAISSSEVEEEHLGIVPGEAVAVNFTLELHHIPDVTVSTANPRDRILXLVXGL 196
                *************888899999************************.688999*********************************************** PP

       GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                sPkv+++veqe++ n+++F++rf+e+l+yy+ +f+s++  lp+  
  Sof010295 197 SPKVLTLVEQESNNNTGPFAQRFAETLDYYTGIFESINLXLPKGX 241
                *************************************99999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.0741254IPR005202Transcription factor GRAS
PfamPF035142.3E-801241IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
PLERLGAYMV EGLVARLAAS GSSIYKALKC KEPRSSDLLS YMHFLYEACP YFKFGYMSAN  60
GAIAEAVKGE DRIHIIDFHI AQGTQWISLL QALAARPGGP PFVRITGIDD SVSAYARGGG  120
LELVGRRLSH IAGLYKVPFQ FDAVAISSSE VEEEHLGIVP GEAVAVNFTL ELHHIPDVTV  180
STANPRDRIL XLVXGLSPKV LTLVEQESNN NTGPFAQRFA ETLDYYTGIF ESINLXLPKG  240
XQGXDSHRTT LAGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-41123939275GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.94640.0bud| callus| inflorescence| leaf| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460928.11e-161chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE11e-147CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLC5XCH41e-160C5XCH4_SORBI; Uncharacterized protein
STRINGSb02g037650.11e-161(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-104GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]