PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof010469

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

YABBY

Protein Properties

Length: 251aa MW: 26538.3 Da PI: 8.091

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-695133731	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	209.2	1.4e-64	19	210	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshld..eslkee................lleelkveeenlks 84 s +eq+Cyv+Cn C+tila +slfk+vtvrCGhC++llsvnl+ + + +hl+ +sl + ll e+ +++ + ++ Sof010469 19 SPTEQLCYVHCNCCDTILAGGGLASSLFKTVTVRCGHCANLLSVNLRGLLlpPAAPPANHLNfgHSLLSPtsphglldelalqapsLLMEQASANLSSTM 118 578******************************************99844344555565422444444789998888877666533333333333333 PP YABBY 85 nvekeesastsvssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++s ++ ++ + + +++ e+p++ v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl Sof010469 119 TGRSNSSCASNLPAAPMpaakPVQQEPELPKTTApsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 210 333333333333444447777777888888754334****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.8E-65	20	210	IPR006780	YABBY protein
SuperFamily	SSF47095	6.68E-8	148	203	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.4E-4	159	202	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSSSSSSSAA FPLDHLAPSP TEQLCYVHCN CCDTILAGGG LASSLFKTVT VRCGHCANLL 60 SVNLRGLLLP PAAPPANHLN FGHSLLSPTS PHGLLDELAL QAPSLLMEQA SANLSSTMTG 120 RSNSSCASNL PAAPMPAAKP VQQEPELPKT TAPSVNRPPE KRQRVPSAYN RFIKDEIQRI 180 KAGNPDITHR EAFSAAAKNW AHFPHIHFGL MPDQGLKKTF KTQDGAEDIL LKDGLYAAAA 240 AAAANMGITP F

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.14887	0.0	callus\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269\|PubMed:17216490, ECO:0000269\|PubMed:17676337}.

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452852.1	1e-155	protein YABBY 4
Swissprot	A2X7Q3	1e-126	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-126	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	C5XS56	1e-154	C5XS56_SORBI; Uncharacterized protein
STRING	Sb04g033590.1	1e-154	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	4e-62	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]