PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010527
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 250aa    MW: 27316 Da    PI: 4.9467
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-19601PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.52.5e-10228102128
        NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                +kktLvf++grap+g++t W+mheyr 
  Sof010527   2 VKKTLVFHRGRAPRGHRTAWIMHEYRT 28 
                79***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.066149IPR003441NAC domain
SuperFamilySSF1019411.28E-11249IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
XVKKTLVFHR GRAPRGHRTA WIMHEYRTAE PQLQQGQNGS FVLYRLFNKN EEESEASDAA  60
DSPSTSSPAI APAVKAENLS QPASAQMSHL LATVSSNEPT SNQQGDDHLL DVLAQLPDLQ  120
PEHTFDGFPT ITSPMRPYTD HPFLGNAGEQ DLSAYIDSII AHQDLEDVLA SPSLADMVEQ  180
ATVNVEPHPT SLPVLDNNSN SKEIAENGRG KVGSETLLLI KGTDGTSAFG WWSSAPKNYN  240
LMKTMLTLHR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.100620.0inflorescence| leaf| meristem| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436309.21e-147NAC domain-containing protein 69 isoform X1
RefseqXP_021304841.11e-147NAC domain-containing protein 69 isoform X2
TrEMBLC5Z2121e-145C5Z212_SORBI; Uncharacterized protein
STRINGSb10g000101.11e-146(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.22e-13NAC 014