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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sof010534 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
GRAS |
| Protein Properties |
Length: 250aa MW: 27133.9 Da PI: 6.7186 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-25444 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 256.3 | 1.1e-78 | 1 | 242 | 121 | 374 |
GRAS 121 qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220
qGlQWp L++ LasRp+gpp++R+ g+g+ s ++l++tg+rL++fA++lg+pfef + v ++ ++++++L v ++Ea+aV++ + h+l+d ++s
Sof010534 1 QGLQWPGLFHILASRPGGPPRVRLAGLGA----SMDALQATGKRLSDFADTLGLPFEFCA-VPEKAGNVDPDKLGVTHREAVAVHWLH--HSLYDVTGSD 93
8****************************....***************************.7*************************9..9999999999 PP
GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
+ +L+l+++l Pkvv++veq+++ s+sFl+rf+ea++yysalfdsl+a++++++ er++vE++ll+rei+nv+a g +r+ + + +++Wre+l
Sof010534 94 FN----TLWLIQRLAPKVVTMVEQDLSQ-SGSFLARFVEAIHYYSALFDSLDASYGEDNPERHVVEQQLLSREIRNVLAVGGPARTGDVKFVGSWREKLA 188
99....********************98.899******************************************************************** PP
GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++GF++++l aa+qa+lll +++sdgy++ ee+g+l lgWkd L+++SaWr
Sof010534 189 QSGFRAASLAGGAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 242
*****************************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
QGLQWPGLFH ILASRPGGPP RVRLAGLGAS MDALQATGKR LSDFADTLGL PFEFCAVPEK 60
AGNVDPDKLG VTHREAVAVH WLHHSLYDVT GSDFNTLWLI QRLAPKVVTM VEQDLSQSGS 120
FLARFVEAIH YYSALFDSLD ASYGEDNPER HVVEQQLLSR EIRNVLAVGG PARTGDVKFV 180
GSWREKLAQS GFRAASLAGG AAAQASLLLG MFPSDGYTLV EENGALKLGW KDLCLLTASA 240
WRPIHQAPCR
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.3618 | 1e-108 | bud| callus| crown| inflorescence| meristem| stem |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the initial daughter cell before its asymmetric division and remains expressed in the endodermal cell layer after the division. {ECO:0000269|PubMed:17446396}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}. |
