PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010692
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 248aa    MW: 26803.7 Da    PI: 5.6531
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-416133726PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS204.27.8e-633222154374
       GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                s++el+etg rL ++A++lg+ fef++ v++rled++l++L+vk+gE++aVn+vl+ hrll++++  +    ++L l +s+ + ++ + e+e  +ns+++
  Sof010692   3 SRQELQETGARLGRVAAALGLAFEFHA-VVDRLEDVRLWMLHVKRGECVAVNCVLAAHRLLRDETGAAI--ADFLGLARSTGAAILLLGEHEDALNSGRW 99 
                689************************.7********************************88877777..99*************************** PP

       GRAS 254 lerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                 +rf++al+yy+a fd++ +a+l+ +s +r+k E++ ++rei+n+va e  +r+erhet++ Wr+r++e GF+++ +++++a+q +++ r+++   y+v+
  Sof010692 100 EARFARALRYYAAAFDAVdAAGLADTSPARAKAEEM-FAREIRNAVAFEAGDRFERHETFAGWRRRMQEGGFQNAGIGDREAMQGSMIARMFAPGNYSVQ 198
                ******************9999**************.********************************************************555*999 PP

       GRAS 353 ee..sgslvlgWkdrpLvsvSaWr 374
                 +   + l+l W+d+++++vSaW+
  Sof010692 199 AQgdGEGLTLRWMDQAMYTVSAWT 222
                554367788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.1411200IPR005202Transcription factor GRAS
PfamPF035142.7E-603222IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
XESRQELQET GARLGRVAAA LGLAFEFHAV VDRLEDVRLW MLHVKRGECV AVNCVLAAHR  60
LLRDETGAAI ADFLGLARST GAAILLLGEH EDALNSGRWE ARFARALRYY AAAFDAVDAA  120
GLADTSPARA KAEEMFAREI RNAVAFEAGD RFERHETFAG WRRRMQEGGF QNAGIGDREA  180
MQGSMIARMF APGNYSVQAQ GDGEGLTLRW MDQAMYTVSA WTPVTDGGGG GSTVSASVST  240
TASHSQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-233223168380Protein SCARECROW
5b3h_A1e-233223167379Protein SCARECROW
5b3h_D1e-233223167379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.20131e-108inflorescence| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269|PubMed:19220793}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436390.11e-172protein DWARF AND LOW-TILLERING
SwissprotQ9LWU91e-112DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLC5Z3741e-170C5Z374_SORBI; Uncharacterized protein
STRINGSb10g001690.11e-171(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.14e-51GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]