PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010741
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 247aa    MW: 27545.1 Da    PI: 10.1752
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-15133730PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.2e-1893142255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r ++ +g+W+AeIrdp+    +  r++lg+f tae Aa a+++a+++++g
  Sof010741  93 HYRGIRCRP-WGKWAAEIRDPV----KgVRVWLGTFPTAEAAALAYDHAARNIRG 142
                7*****999.**********75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-3192151IPR001471AP2/ERF domain
PROSITE profilePS5103223.22293150IPR001471AP2/ERF domain
PfamPF008476.4E-1193142IPR001471AP2/ERF domain
CDDcd000182.54E-1893152No hitNo description
SuperFamilySSF541711.24E-2193152IPR016177DNA-binding domain
SMARTSM003804.5E-3793156IPR001471AP2/ERF domain
PRINTSPR003674.0E-1094105IPR001471AP2/ERF domain
PRINTSPR003674.0E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
XEKERKASRA GAKMCGGAIL VDLNPSTPAR RMEKQRKADD FEAAFREFDE EDEEMVEWDT  60
KAAPALVFRA TKPMARLVQQ QPAPSRRRNP ARHYRGIRCR PWGKWAAEIR DPVKGVRVWL  120
GTFPTAEAAA LAYDHAARNI RGSRAKLNFP ASSSSHGAAD AVIDLVEQEE QEQRAAVAAA  180
AVLKXEGXER SSGSGALPDF SWQGVSAAYD EAPEXPNRRA TKTRRRPGPR GSRXDXWFDW  240
GPFWGNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2392155468ATERF1
3gcc_A2e-2392155468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.165350.0crown| meristem| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.15e-56ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2T7CGR13e-55A0A2T7CGR1_9POAL; Uncharacterized protein
STRINGSb01g045040.15e-52(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-22ethylene-responsive element binding protein