PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010747
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 247aa    MW: 26963.9 Da    PI: 8.4319
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-278133725PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31167225159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk++er +ed ++v++tYeg+H+h+
  Sof010747 167 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRMERLSEDCRMVITTYEGRHTHS 225
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-32152225IPR003657WRKY domain
SuperFamilySSF1182909.29E-28159225IPR003657WRKY domain
PROSITE profilePS5081128.461162224IPR003657WRKY domain
SMARTSM007743.9E-36167226IPR003657WRKY domain
PfamPF031063.0E-24168224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEGSSQLLET CLPASLYALS PCAPPHPPLL APLPNQHKLL QMPLVQEPAA NNHHGVMLFS  60
DHHQHGGLLY PLLLPGIPFC PSAAAATCEK TTTTGFAALD AGEAGRTSAA KAAAEIASTT  120
TTTCNGPSSC NWWKGPAAAG EKGRMKVRRK MREPRFCFQT RSDVDVLDDG YKWRKYGQKV  180
VKNSLHPRSY YRCTHSNCRV KKRMERLSED CRMVITTYEG RHTHSPCSDD ADAXXGDHTG  240
SCAXTSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24158224874Probable WRKY transcription factor 4
2lex_A3e-24158224874Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150GRMKVRRKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.143630.0crown| inflorescence| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448267.21e-136probable WRKY transcription factor 57 isoform X2
TrEMBLA0A2K9UZ961e-150A0A2K9UZ96_9POAL; WRKY transcription factor 4
STRINGSb06g024220.11e-135(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-57WRKY family protein