PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof010827

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

VOZ

Protein Properties

Length: 246aa MW: 27864 Da PI: 7.5836

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-30134	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	304.8	6.8e-94	2	164	55	217
VOZ 55 idlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrs 154 idlkdg+lfaalsak++gk+vgip cegaatakspwna+elf+l ++ege+i ewlffdkprraf+sgnrkq slpd++grgwhes kqvmk+fgglkrs Sof010827 2 IDLKDGPLFAALSAKIRGKNVGIPICEGAATAKSPWNAPELFHLYIFEGESITEWLFFDKPRRAFDSGNRKQLSLPDHNGRGWHESMKQVMKDFGGLKRS 101 89************************************************************************************************ PP VOZ 155 yymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 yymdpqps+s+ewhlyeyeine+da+alyrlelk++++kk ak+k+++++++++q++++rl+a Sof010827 102 YYMDPQPSNSYEWHLYEYEINECDAFALYRLELKSSHAKKIAKSKLACNPMNEIQQQMVRLSA 164 ***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
XIDLKDGPLF AALSAKIRGK NVGIPICEGA ATAKSPWNAP ELFHLYIFEG ESITEWLFFD 60 KPRRAFDSGN RKQLSLPDHN GRGWHESMKQ VMKDFGGLKR SYYMDPQPSN SYEWHLYEYE 120 INECDAFALY RLELKSSHAK KIAKSKLACN PMNEIQQQMV RLSADSPVDT KRTARSRTKA 180 NPIDANTNIY SVPNTAVQAN VPNAYQPGSQ VDQMTYLDGS VVYGPHLPYG YSTERSDFYW 240 NSNDGT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.13685	0.0	leaf\| root\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458501.2	1e-169	transcription factor VOZ1
Swissprot	Q9SGQ0	2e-82	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1B6Q642	1e-168	A0A1B6Q642_SORBI; Uncharacterized protein
STRING	Sb03g034810.1	1e-169	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	9e-80	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]