PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010836
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 246aa    MW: 27959.2 Da    PI: 9.3165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-557133726PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-05137158122
                EEETTTTEEESSHHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                ++C+ C  +++r+s+L++H+r 
  Sof010836 137 WTCSLCQARCTRQSELENHLRG 158
                58******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF128740.0192240No hitNo description
SuperFamilySSF576676.39E-963104No hitNo description
SMARTSM004512.7E-469103IPR003604Zinc finger, U1-type
PfamPF128742.9E-57296No hitNo description
SMARTSM003551.47296IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807496IPR007087Zinc finger, C2H2
SuperFamilySSF576675.06E-10116167No hitNo description
SMARTSM004510.0078134168IPR003604Zinc finger, U1-type
PfamPF128742.1E-8137161No hitNo description
SMARTSM003550.041137161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139161IPR007087Zinc finger, C2H2
SuperFamilySSF576676.48E-9171212No hitNo description
SMARTSM004511.3E-5177211IPR003604Zinc finger, U1-type
PROSITE profilePS501718.95180210IPR000690Zinc finger, C2H2-type matrin
PfamPF128742.8E-6180204No hitNo description
SMARTSM003550.42180204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182204IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-8207243No hitNo description
SMARTSM004510.29212246IPR003604Zinc finger, U1-type
SMARTSM0035516215239IPR015880Zinc finger, C2H2-like
PfamPF128741.4E-4216239No hitNo description
PROSITE patternPS000280217239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
TQTMLAKKYI DFFSEMGLFH GQVKATSQGN LRQHFAGQKH WSKVASLVSE NNAKCQKAKE  60
TADKSGNALP MWVCRFCQAN CTCKSDLENH MKGKRHQTNV RALLEECKNK ESNYASPEVK  120
SGLNNVQQDE EGPAPTWTCS LCQARCTRQS ELENHLRGKR HRLNFLLLQV EEAKLYLSLY  180
FCKLCNLQCN SKNTLAEHCK GKRHSHKVEK LMSLSFCEVC NLQCNSAKML AHHRTGKKHL  240
AKLNGC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.59419e-55inflorescence| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801575.11e-77UBP1-associated proteins 1C-like
TrEMBLA0A2T7ESD51e-78A0A2T7ESD5_9POAL; Uncharacterized protein
TrEMBLA0A3L6T4047e-79A0A3L6T404_PANMI; Uncharacterized protein
STRINGPavir.Hb01006.1.p1e-109(Panicum virgatum)
STRINGPavir.J27217.1.p1e-109(Panicum virgatum)