PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010949
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 245aa    MW: 25722.7 Da    PI: 7.7549
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S52891597PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30127185159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh 
  Sof010949 127 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAEGCGVKKRVERDRDDPRYVITTYDGVHNHA 185
                59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-31118187IPR003657WRKY domain
SuperFamilySSF1182902.22E-27119187IPR003657WRKY domain
PROSITE profilePS5081132.053122187IPR003657WRKY domain
SMARTSM007743.7E-34127186IPR003657WRKY domain
PfamPF031066.4E-24128184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAASLGLAHE ACYAAYPPAA AASSYFPSPP PPPGDLVAEF PPPAAATAMV DDYYFQFREE  60
MGGARAPGCG GYCSPPAPVF DNGMNLLSYG SADGDGRRLM SGPAGGNGGG RPASLIGFRT  120
RSEVDVLDDG FKWRKYGKKA VKSSPNPRNY YRCSAEGCGV KKRVERDRDD PRYVITTYDG  180
VHNHAAPGAA YVCPPPRGAS TTPCFSPPYS ASSAPLVAAP SWNAAFDAWK AQLHAAAAHS  240
SESSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26117187777Probable WRKY transcription factor 4
2lex_A1e-26117187777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.54850.0bud| callus| crown| leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455037.12e-92probable WRKY transcription factor 50 isoform X1
TrEMBLC7E3V31e-175C7E3V3_SACOF; WRKY transcription factor
STRINGSb03g003360.16e-92(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.15e-38WRKY DNA-binding protein 50